Detailed information of SNP:
|
SNP ID:
sf1209673446(Gbrowse)
Chromosome: chr12 Position: 9673446 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 73.72% | 26.28% |
| All Indica | 788 | 69.92% | 30.08% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 64 | 23.44% | 76.56% |
| Indica I | 372 | 56.45% | 43.55% |
| Indica II | 209 | 85.17% | 14.83% |
| Indica Intermediate | 207 | 78.74% | 21.26% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209673446 | T->G | INTERGENIC | None |