Detailed information of SNP:
|
SNP ID:
sf1209674117(Gbrowse)
Chromosome: chr12 Position: 9674117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 58.22% | 41.78% |
| All Indica | 787 | 48.67% | 51.33% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 370 | 43.51% | 56.49% |
| Indica II | 210 | 48.57% | 51.43% |
| Indica Intermediate | 207 | 57.97% | 42.03% |
| Temperate Japonica | 334 | 90.72% | 9.28% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209674117 | T->C | INTERGENIC | None |