Detailed information of SNP:
|
SNP ID:
sf1209674763(Gbrowse)
Chromosome: chr12 Position: 9674763 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 62.76% | 37.24% |
| All Indica | 767 | 55.15% | 44.85% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 365 | 47.12% | 52.88% |
| Indica II | 204 | 56.86% | 43.14% |
| Indica Intermediate | 198 | 68.18% | 31.82% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209674763 | T->C | INTERGENIC | None |