Detailed information of SNP:
SNP ID:
sf1209675463(Gbrowse)
Chromosome: chr12 Position: 9675463 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1367 | 54.13% | 45.87% |
All Indica | 753 | 72.24% | 27.76% |
All Japonica | 494 | 20.04% | 79.96% |
Aus | 65 | 95.38% | 4.62% |
Indica I | 357 | 72.27% | 27.73% |
Indica II | 205 | 78.05% | 21.95% |
Indica Intermediate | 191 | 65.97% | 34.03% |
Temperate Japonica | 332 | 10.54% | 89.46% |
Tropical Japonica | 94 | 34.04% | 65.96% |
Japonica Intermediate | 68 | 47.06% | 52.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1209675463 | T->G | INTERGENIC | None |