Detailed information of SNP:



SNP ID: sf1209675463(Gbrowse)

Chromosome: chr12

Position: 9675463
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1367 54.13% 45.87%
All Indica753 72.24% 27.76%
All Japonica494 20.04% 79.96%
Aus65 95.38% 4.62%
Indica I357 72.27% 27.73%
Indica II205 78.05% 21.95%
Indica Intermediate191 65.97% 34.03%
Temperate Japonica332 10.54% 89.46%
Tropical Japonica94 34.04% 65.96%
Japonica Intermediate68 47.06% 52.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 51.22% 48.78%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1209675463 T->G INTERGENIC None