Detailed information of SNP:
|
SNP ID:
sf1209675637(Gbrowse)
Chromosome: chr12 Position: 9675637 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 59.13% | 40.87% |
| All Indica | 785 | 50.06% | 49.94% |
| All Japonica | 496 | 81.25% | 18.75% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 372 | 44.35% | 55.65% |
| Indica II | 207 | 49.28% | 50.72% |
| Indica Intermediate | 206 | 61.17% | 38.83% |
| Temperate Japonica | 334 | 91.02% | 8.98% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209675637 | A->G | INTERGENIC | None |