Detailed information of SNP:
|
SNP ID:
sf1209675820(Gbrowse)
Chromosome: chr12 Position: 9675820 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 63.38% | 36.62% |
| All Indica | 748 | 55.88% | 44.12% |
| All Japonica | 488 | 82.99% | 17.01% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 342 | 49.71% | 50.29% |
| Indica II | 204 | 54.41% | 45.59% |
| Indica Intermediate | 202 | 67.82% | 32.18% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 88 | 70.45% | 29.55% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209675820 | T->C | INTERGENIC | None |