Detailed information of SNP:
|
SNP ID:
sf1209677395(Gbrowse)
Chromosome: chr12 Position: 9677395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 58.42% | 41.58% |
| All Indica | 785 | 48.54% | 51.46% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 369 | 40.38% | 59.62% |
| Indica II | 209 | 50.24% | 49.76% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209677395 | T->C | INTERGENIC | None |