Detailed information of SNP:
|
SNP ID:
sf1209688617(Gbrowse)
Chromosome: chr12 Position: 9688617 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 56.00% | 44.00% |
| All Indica | 759 | 76.68% | 23.32% |
| All Japonica | 493 | 18.86% | 81.14% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 351 | 72.36% | 27.64% |
| Indica II | 208 | 82.69% | 17.31% |
| Indica Intermediate | 200 | 78.00% | 22.00% |
| Temperate Japonica | 331 | 11.48% | 88.52% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209688617 | G->A | LOC_Os12g16900(LOC_Os12g16900.1) | Synonymous |