Detailed information of SNP:
|
SNP ID:
sf1209688937(Gbrowse)
Chromosome: chr12 Position: 9688937 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 67.97% | 32.03% |
| All Indica | 783 | 91.57% | 8.43% |
| All Japonica | 479 | 24.63% | 75.37% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 92.33% | 7.67% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 324 | 16.05% | 83.95% |
| Tropical Japonica | 89 | 37.08% | 62.92% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209688937 | T->C | LOC_Os12g16900(LOC_Os12g16900.1) | INTRON |