Detailed information of SNP:
|
SNP ID:
sf1209692142(Gbrowse)
Chromosome: chr12 Position: 9692142 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1305 | 82.53% | 17.47% |
| All Indica | 725 | 80.83% | 19.17% |
| All Japonica | 477 | 92.66% | 7.34% |
| Aus | 54 | 27.78% | 72.22% |
| Indica I | 321 | 72.27% | 27.73% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 200 | 84.00% | 16.00% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 82 | 82.93% | 17.07% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 9 | 22.22% | 77.78% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209692142 | C->T | LOC_Os12g16900(LOC_Os12g16900.1) | Non-Synonymous SNP |