Detailed information of SNP:
|
SNP ID:
sf1209697743(Gbrowse)
Chromosome: chr12 Position: 9697743 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 53.39% | 46.61% |
| All Indica | 712 | 73.03% | 26.97% |
| All Japonica | 495 | 19.19% | 80.81% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 337 | 78.04% | 21.96% |
| Indica II | 193 | 72.02% | 27.98% |
| Indica Intermediate | 182 | 64.84% | 35.16% |
| Temperate Japonica | 333 | 9.31% | 90.69% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209697743 | A->G | INTERGENIC | None |