Detailed information of SNP:
|
SNP ID:
sf1209697972(Gbrowse)
Chromosome: chr12 Position: 9697972 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 65.50% | 34.50% |
| All Indica | 782 | 91.43% | 8.57% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 365 | 93.97% | 6.03% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 334 | 10.18% | 89.82% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209697972 | A->G | LOC_Os12g16920(LOC_Os12g16920.1) | Synonymous |