Detailed information of SNP:
|
SNP ID:
sf1209699438(Gbrowse)
Chromosome: chr12 Position: 9699438 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 67.09% | 32.91% |
| All Indica | 786 | 93.89% | 6.11% |
| All Japonica | 494 | 20.65% | 79.35% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 369 | 95.93% | 4.07% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 332 | 11.45% | 88.55% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209699438 | C->T | LOC_Os12g16920(LOC_Os12g16920.1) | Non-Synonymous SNP |