Detailed information of SNP:
|
SNP ID:
sf1209700149(Gbrowse)
Chromosome: chr12 Position: 9700149 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 64.32% | 35.68% |
| All Indica | 760 | 89.74% | 10.26% |
| All Japonica | 494 | 20.65% | 79.35% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 91.55% | 8.45% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 194 | 90.21% | 9.79% |
| Temperate Japonica | 332 | 11.14% | 88.86% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209700149 | T->C | LOC_Os12g16920(LOC_Os12g16920.1) | Non-Synonymous SNP |