Detailed information of SNP:
|
SNP ID:
sf1209706650(Gbrowse)
Chromosome: chr12 Position: 9706650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 98.69% | 1.31% |
| All Indica | 761 | 97.77% | 2.23% |
| All Japonica | 489 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 345 | 97.39% | 2.61% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209706650 | C->T | INTERGENIC | None |