Detailed information of SNP:
|
SNP ID:
sf1209708295(Gbrowse)
Chromosome: chr12 Position: 9708295 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 83.03% | 16.97% |
| All Indica | 762 | 82.81% | 17.19% |
| All Japonica | 486 | 90.33% | 9.67% |
| Aus | 59 | 42.37% | 57.63% |
| Indica I | 345 | 75.94% | 24.06% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209708295 | G->T | INTERGENIC | None |