Detailed information of SNP:
|
SNP ID:
sf1209711660(Gbrowse)
Chromosome: chr12 Position: 9711660 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 65.44% | 34.56% |
| All Indica | 769 | 91.03% | 8.97% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 357 | 93.00% | 7.00% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209711660 | A->G | LOC_Os12g16960(LOC_Os12g16960.1) | Synonymous |