Detailed information of SNP:
|
SNP ID:
sf1209711941(Gbrowse)
Chromosome: chr12 Position: 9711941 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 63.92% | 36.08% |
| All Indica | 777 | 87.13% | 12.87% |
| All Japonica | 494 | 21.66% | 78.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 88.15% | 11.85% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 204 | 86.27% | 13.73% |
| Temperate Japonica | 334 | 12.57% | 87.43% |
| Tropical Japonica | 92 | 35.87% | 64.13% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209711941 | G->T | LOC_Os12g16960(LOC_Os12g16960.1) | INTRON |