Detailed information of SNP:
|
SNP ID:
sf1209713233(Gbrowse)
Chromosome: chr12 Position: 9713233 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 75.92% | 24.08% |
| All Indica | 788 | 96.95% | 3.05% |
| All Japonica | 446 | 34.75% | 65.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 301 | 29.57% | 70.43% |
| Tropical Japonica | 80 | 41.25% | 58.75% |
| Japonica Intermediate | 65 | 50.77% | 49.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209713233 | A->G | LOC_Os12g16960(LOC_Os12g16960.1) | Non-Synonymous SNP |