Detailed information of SNP:
|
SNP ID:
sf1209713462(Gbrowse)
Chromosome: chr12 Position: 9713462 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 95.33% | 4.67% |
| All Indica | 793 | 94.45% | 5.55% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209713462 | A->G | LOC_Os12g16960(LOC_Os12g16960.1) | Non-Synonymous SNP |