Detailed information of SNP:
|
SNP ID:
sf1209743736(Gbrowse)
Chromosome: chr12 Position: 9743736 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 96.39% | 3.61% |
| All Indica | 772 | 94.56% | 5.44% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 360 | 95.28% | 4.72% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209743736 | T->C | INTERGENIC | None |