Detailed information of SNP:
|
SNP ID:
sf1209747641(Gbrowse)
Chromosome: chr12 Position: 9747641 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 51.99% | 48.01% |
| All Indica | 733 | 77.90% | 22.10% |
| All Japonica | 478 | 11.30% | 88.70% |
| Aus | 48 | 68.75% | 31.25% |
| Indica I | 337 | 73.00% | 27.00% |
| Indica II | 202 | 82.18% | 17.82% |
| Indica Intermediate | 194 | 81.96% | 18.04% |
| Temperate Japonica | 329 | 8.51% | 91.49% |
| Tropical Japonica | 86 | 16.28% | 83.72% |
| Japonica Intermediate | 63 | 19.05% | 80.95% |
| Group VI/Aromatic | 6 | 16.67% | 83.33% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209747641 | A->G | LOC_Os12g17040(LOC_Os12g17040.1) | INTRON |