Detailed information of SNP:
|
SNP ID:
sf1209790466(Gbrowse)
Chromosome: chr12 Position: 9790466 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 86.33% | 13.67% |
| All Indica | 778 | 78.79% | 21.21% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 364 | 84.07% | 15.93% |
| Indica II | 209 | 64.59% | 35.41% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209790466 | C->T | LOC_Os12g17100(LOC_Os12g17100.1) | Non-Synonymous SNP |