Detailed information of SNP:
|
SNP ID:
sf1209794699(Gbrowse)
Chromosome: chr12 Position: 9794699 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.09% | 15.91% |
| All Indica | 795 | 75.22% | 24.78% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209794699 | C->T | LOC_Os12g17110(LOC_Os12g17110.1) | Non-Synonymous SNP |