Detailed information of SNP:
|
SNP ID:
sf1209795897(Gbrowse)
Chromosome: chr12 Position: 9795897 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 67.92% | 32.08% |
| All Indica | 793 | 93.32% | 6.68% |
| All Japonica | 496 | 21.98% | 78.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209795897 | A->G | INTERGENIC | None |