Detailed information of SNP:
|
SNP ID:
sf1209810723(Gbrowse)
Chromosome: chr12 Position: 9810723 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 65.82% | 34.18% |
| All Indica | 799 | 58.70% | 41.30% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209810723 | A->G | INTERGENIC | None |