Detailed information of SNP:
|
SNP ID:
sf1209812211(Gbrowse)
Chromosome: chr12 Position: 9812211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 74.01% | 25.99% |
| All Indica | 792 | 56.19% | 43.81% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 61.73% | 38.27% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 209 | 49.28% | 50.72% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209812211 | C->T | INTERGENIC | None |