Detailed information of SNP:
|
SNP ID:
sf1209812223(Gbrowse)
Chromosome: chr12 Position: 9812223 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 62.21% | 37.79% |
| All Indica | 779 | 86.01% | 13.99% |
| All Japonica | 494 | 18.62% | 81.38% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 361 | 83.66% | 16.34% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 65 | 27.69% | 72.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209812223 | T->C | INTERGENIC | None |