Detailed information of SNP:
|
SNP ID:
sf1209873626(Gbrowse)
Chromosome: chr12 Position: 9873626 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 96.40% | 3.60% |
| All Indica | 794 | 98.61% | 1.39% |
| All Japonica | 473 | 91.75% | 8.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 318 | 93.08% | 6.92% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 63 | 76.19% | 23.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209873626 | G->T | LOC_Os12g17250(LOC_Os12g17250.1) | INTRON |