Detailed information of SNP:
|
SNP ID:
sf1209873672(Gbrowse)
Chromosome: chr12 Position: 9873672 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 96.07% | 3.93% |
| All Indica | 792 | 98.61% | 1.39% |
| All Japonica | 484 | 90.91% | 9.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 325 | 92.00% | 8.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209873672 | A->G | LOC_Os12g17250(LOC_Os12g17250.1) | Synonymous |