Detailed information of SNP:
|
SNP ID:
sf1209886964(Gbrowse)
Chromosome: chr12 Position: 9886964 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1204 | 90.45% | 9.55% |
| All Indica | 627 | 89.15% | 10.85% |
| All Japonica | 477 | 92.24% | 7.76% |
| Aus | 56 | 87.50% | 12.50% |
| Indica I | 306 | 92.48% | 7.52% |
| Indica II | 160 | 83.12% | 16.87% |
| Indica Intermediate | 161 | 88.82% | 11.18% |
| Temperate Japonica | 329 | 92.71% | 7.29% |
| Tropical Japonica | 84 | 89.29% | 10.71% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 33 | 90.91% | 9.09% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209886964 | A->G | LOC_Os12g17290(LOC_Os12g17290.1) | Non-Synonymous SNP |