Detailed information of SNP:
|
SNP ID:
sf1209887892(Gbrowse)
Chromosome: chr12 Position: 9887892 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.92% | 3.08% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 51 | 47.06% | 52.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209887892 | C->T | LOC_Os12g17290(LOC_Os12g17290.1) | INTRON |