Detailed information of SNP:
|
SNP ID:
sf1209889422(Gbrowse)
Chromosome: chr12 Position: 9889422 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 80.58% | 19.42% |
| All Indica | 770 | 67.01% | 32.99% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 361 | 72.85% | 27.15% |
| Indica II | 207 | 68.12% | 31.88% |
| Indica Intermediate | 202 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209889422 | C->T | LOC_Os12g17290(LOC_Os12g17290.1) | Synonymous |