Detailed information of SNP:
|
SNP ID:
sf1209890589(Gbrowse)
Chromosome: chr12 Position: 9890589 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.62% | 4.38% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 64 | 42.19% | 57.81% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209890589 | C->A | LOC_Os12g17290(LOC_Os12g17290.1) | Non-Synonymous SNP |