Detailed information of SNP:
|
SNP ID:
sf1209891729(Gbrowse)
Chromosome: chr12 Position: 9891729 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 86.69% | 13.31% |
| All Indica | 796 | 86.68% | 13.32% |
| All Japonica | 496 | 85.28% | 14.72% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 334 | 81.14% | 18.86% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209891729 | A->G | LOC_Os12g17290(LOC_Os12g17290.1) | INTRON |