Detailed information of SNP:
|
SNP ID:
sf1209893797(Gbrowse)
Chromosome: chr12 Position: 9893797 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.17% | 45.83% |
| All Indica | 794 | 75.44% | 24.56% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 73.39% | 26.61% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209893797 | T->C | LOC_Os12g17290(LOC_Os12g17290.1) | INTRON |