Detailed information of SNP:
|
SNP ID:
sf1209894061(Gbrowse)
Chromosome: chr12 Position: 9894061 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 96.76% | 3.24% |
| All Indica | 680 | 94.12% | 5.88% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 327 | 94.80% | 5.20% |
| Indica II | 189 | 94.18% | 5.82% |
| Indica Intermediate | 164 | 92.68% | 7.32% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209894061 | A->T | LOC_Os12g17290(LOC_Os12g17290.1) | INTRON |