Detailed information of SNP:
|
SNP ID:
sf1209894428(Gbrowse)
Chromosome: chr12 Position: 9894428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.99% | 5.01% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209894428 | C->T | LOC_Os12g17290(LOC_Os12g17290.1) | Synonymous |