Detailed information of SNP:
|
SNP ID:
sf1209897878(Gbrowse)
Chromosome: chr12 Position: 9897878 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 59.06% | 40.94% |
| All Indica | 736 | 90.49% | 9.51% |
| All Japonica | 488 | 8.20% | 91.80% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 337 | 91.69% | 8.31% |
| Indica II | 199 | 85.93% | 14.07% |
| Indica Intermediate | 200 | 93.00% | 7.00% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 91 | 27.47% | 72.53% |
| Japonica Intermediate | 64 | 17.19% | 82.81% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209897878 | T->C | LOC_Os12g17290(LOC_Os12g17290.1) | Synonymous |