Detailed information of SNP:
|
SNP ID:
sf1209898726(Gbrowse)
Chromosome: chr12 Position: 9898726 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 52.45% | 47.55% |
| All Indica | 750 | 78.53% | 21.47% |
| All Japonica | 477 | 4.82% | 95.18% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 351 | 81.77% | 18.23% |
| Indica II | 199 | 75.38% | 24.62% |
| Indica Intermediate | 200 | 76.00% | 24.00% |
| Temperate Japonica | 330 | 2.12% | 97.88% |
| Tropical Japonica | 85 | 14.12% | 85.88% |
| Japonica Intermediate | 62 | 6.45% | 93.55% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209898726 | C->T | LOC_Os12g17300(LOC_Os12g17300.1) | Synonymous |