Detailed information of SNP:
|
SNP ID:
sf1209899535(Gbrowse)
Chromosome: chr12 Position: 9899535 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 62.54% | 37.46% |
| All Indica | 779 | 94.74% | 5.26% |
| All Japonica | 481 | 6.86% | 93.14% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 207 | 89.86% | 10.14% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 328 | 2.13% | 97.87% |
| Tropical Japonica | 90 | 21.11% | 78.89% |
| Japonica Intermediate | 63 | 11.11% | 88.89% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209899535 | T->C | LOC_Os12g17300(LOC_Os12g17300.1) | INTRON |