Detailed information of SNP:
|
SNP ID:
sf1209902118(Gbrowse)
Chromosome: chr12 Position: 9902118 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 65.93% | 34.07% |
| All Indica | 772 | 94.69% | 5.31% |
| All Japonica | 462 | 12.34% | 87.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 199 | 84.92% | 15.08% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 316 | 5.70% | 94.30% |
| Tropical Japonica | 90 | 24.44% | 75.56% |
| Japonica Intermediate | 56 | 30.36% | 69.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209902118 | T->A | INTERGENIC | None |