Detailed information of SNP:
|
SNP ID:
sf1209918864(Gbrowse)
Chromosome: chr12 Position: 9918864 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.76% | 4.24% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209918864 | C->T | LOC_Os12g17320(LOC_Os12g17320.1) | INTRON |