Detailed information of SNP:
|
SNP ID:
sf1209923909(Gbrowse)
Chromosome: chr12 Position: 9923909 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 50.28% | 49.72% |
| All Indica | 795 | 76.35% | 23.65% |
| All Japonica | 496 | 14.92% | 85.08% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 373 | 73.46% | 26.54% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209923909 | A->G | INTERGENIC | None |