Detailed information of SNP:
|
SNP ID:
sf1209939011(Gbrowse)
Chromosome: chr12 Position: 9939011 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 91.82% | 8.18% |
| All Indica | 773 | 85.25% | 14.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 82.35% | 17.65% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 204 | 88.24% | 11.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209939011 | C->A | LOC_Os12g17360(LOC_Os12g17360.1) | Non-Synonymous SNP |