Detailed information of SNP:
|
SNP ID:
sf1209940271(Gbrowse)
Chromosome: chr12 Position: 9940271 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 90.23% | 9.77% |
| All Indica | 772 | 82.38% | 17.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 77.47% | 22.53% |
| Indica II | 204 | 86.27% | 13.73% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209940271 | G->A | LOC_Os12g17360(LOC_Os12g17360.1) | INTRON |