Detailed information of SNP:
|
SNP ID:
sf1209941002(Gbrowse)
Chromosome: chr12 Position: 9941002 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 83.58% | 16.42% |
| All Indica | 779 | 75.99% | 24.01% |
| All Japonica | 493 | 93.91% | 6.09% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 360 | 70.00% | 30.00% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209941002 | A->G | LOC_Os12g17360(LOC_Os12g17360.1) | Non-Synonymous SNP |