Detailed information of SNP:
|
SNP ID:
sf1209944020(Gbrowse)
Chromosome: chr12 Position: 9944020 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 82.07% | 17.93% |
| All Indica | 791 | 74.08% | 25.92% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 67.30% | 32.70% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209944020 | A->G | INTERGENIC | None |