Detailed information of SNP:
|
SNP ID:
sf1209944294(Gbrowse)
Chromosome: chr12 Position: 9944294 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 81.47% | 18.53% |
| All Indica | 795 | 73.21% | 26.79% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 66.58% | 33.42% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209944294 | T->C | INTERGENIC | None |