Detailed information of SNP:
|
SNP ID:
sf1209946655(Gbrowse)
Chromosome: chr12 Position: 9946655 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 82.17% | 17.83% |
| All Indica | 789 | 74.40% | 25.60% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 67.57% | 32.43% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1209946655 | T->A | INTERGENIC | None |